PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05832.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24018.6 Da PI: 8.6055

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.6	1e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s r vtfskRr g++KKAeELS+LCdae+ vi+fs t+kly ++s PHU05832.1 9 KKIENISSRRVTFSKRRSGLFKKAEELSILCDAEIGVIVFSDTDKLYKFAS 59 68***********************************************86 PP
2	K-box	54.2	6.1e-19	84	160	13	89
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++ + e++ Lk+e+ L++ +++G++L+ L +keLqqLe+qL +++ +i++kK+++lle ++++ ++ +el + PHU05832.1 84 QNVAQSLEVNALKDEVARLRQVTGRMMGKELDGLGYKELQQLEHQLTEGILSIKNKKEQVLLELLQKSNMQIEELGK 160 44556789*******************************************************99999998888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MGRGKIEMKK IENISSRRVT FSKRRSGLFK KAEELSILCD AEIGVIVFSD TDKLYKFASS 60 NSSMEKIMDR YTGCPVSSDH TSVQNVAQSL EVNALKDEVA RLRQVTGRMM GKELDGLGYK 120 ELQQLEHQLT EGILSIKNKK EQVLLELLQK SNMQIEELGK KSSGGSSTVI CDYKSVREEI 180 SDTSLSLGLS VATSQQKKIP KIECTSNDSG KLMILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	2e-37	MIKC_MADS family protein