PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU05953.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 838aa MW: 93974.7 Da PI: 6.3943

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU05953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	51.4	2.2e-16	598	642	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++l+ l+++F +++dAA++Lgv+ ++ KriCRq GI RWP+ k PHU05953.1 598 KVTLQFLKQFFGRNLNDAANCLGVSRSTFKRICRQQGIFRWPRMK 642 7899**************************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MPTNKKIMHN HKANTKSSIT IKNRGSTRRM TTIQGGSLGP YHLRKPELKL AVEFKTTAPD 60 MFVDQATEQP QIQEFEESQY PATMESPINL YNLDCYFNLP PSPPFSDLLL SPLWNSSDCN 120 DTGNSVGSAI RRITDDLHFS GDSESYPDGS PGDFGKSLKM SPRSIYVCTI KERICAALRY 180 IDSMGEDILI QFWAPVKVNS RFVLATSEQP FVGGDSTSAI LQYRLISLMY AFSVDGTDDG 240 CIGLPGRVFM TKFPEWTPNV QYYSSKEFPQ LDHALNYNIR GTLALPVFEG EICVGVLELV 300 MTSQKINYAP EFDKVCKALE ATNLKSTGTF DQQATWIYNE DFEIAQSEIL ELFLAVCETH 360 KLPLAQTWLP QRHQNAMICG KRFSGLTCVP SFAFYVTDAH MWGFREACLE HHLQDEQGLP 420 GRAFSSLNAC FCADISLFCK SEYPLVHYAR MFGLQSSLTI PVCNNHSEKD TYVLEFFLPH 480 SSTDHKIQLQ IAASILATTK ESLQNSKVIQ WIEPKVEGNF EIIDLSVGKK LRLSPVPELN 540 SQTIDTRHGP ETSQSGHVSK EQDFSMQQSS ECDVALLKAR SDANAENITF SIFEKDGKVT 600 LQFLKQFFGR NLNDAANCLG VSRSTFKRIC RQQGIFRWPR MKKTSTTNCF HRITEHVNEA 660 AQMVEEASTR TSLAQDPMPG FGSTSSTNMK NPVHHGLLFK QVQATTFAPG TREMQTDKSN 720 TSVTLSSFGI SIGAYKQVPE SRIPSVAALQ NGETATIKAR YGEHFIKFKL PFSSQLAELE 780 NKVADRLKLK IGTFRIQYQD ADDDWIIIAC NDDLESCLSE RRSLGDKAIK MLVESIDM

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MPTNKKIMHN HKANTKSSIT IKNRGSTRRM TTIQGGSLGP YHLRKPELKL AVEFKTTAPD  60
MFVDQATEQP QIQEFEESQY PATMESPINL YNLDCYFNLP PSPPFSDLLL SPLWNSSDCN  120
DTGNSVGSAI RRITDDLHFS GDSESYPDGS PGDFGKSLKM SPRSIYVCTI KERICAALRY  180
IDSMGEDILI QFWAPVKVNS RFVLATSEQP FVGGDSTSAI LQYRLISLMY AFSVDGTDDG  240
CIGLPGRVFM TKFPEWTPNV QYYSSKEFPQ LDHALNYNIR GTLALPVFEG EICVGVLELV  300
MTSQKINYAP EFDKVCKALE ATNLKSTGTF DQQATWIYNE DFEIAQSEIL ELFLAVCETH  360
KLPLAQTWLP QRHQNAMICG KRFSGLTCVP SFAFYVTDAH MWGFREACLE HHLQDEQGLP  420
GRAFSSLNAC FCADISLFCK SEYPLVHYAR MFGLQSSLTI PVCNNHSEKD TYVLEFFLPH  480
SSTDHKIQLQ IAASILATTK ESLQNSKVIQ WIEPKVEGNF EIIDLSVGKK LRLSPVPELN  540
SQTIDTRHGP ETSQSGHVSK EQDFSMQQSS ECDVALLKAR SDANAENITF SIFEKDGKVT  600
LQFLKQFFGR NLNDAANCLG VSRSTFKRIC RQQGIFRWPR MKKTSTTNCF HRITEHVNEA  660
AQMVEEASTR TSLAQDPMPG FGSTSSTNMK NPVHHGLLFK QVQATTFAPG TREMQTDKSN  720
TSVTLSSFGI SIGAYKQVPE SRIPSVAALQ NGETATIKAR YGEHFIKFKL PFSSQLAELE  780
NKVADRLKLK IGTFRIQYQD ADDDWIIIAC NDDLESCLSE RRSLGDKAIK MLVESIDM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-156	Nin-like family protein