PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06297.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19211.5 Da    PI: 4.5602
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.92.2e-12251149
                S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49
                ++ien++ r vtfskR+ g+ KKA+ L     d++v +i +s++gk y +
  PHU06297.1  2 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVDVGIISYSPNGKPYSF 51
                57************************9852679************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MEKIENETTR LVTFSKRKSG LYKKASKLVE KYDDVDVGII SYSPNGKPYS FFHPTFDSVV  60
GHFVSPDTQP SVDSGIVAAS AQIKVMERRA QLDNLDIVEK IISNQTPGAN DMENLWEYID  120
NVNEEDVKRL EEWLDLVELK INHKLMMLEN GATSSTQAPS NNAYQAYGDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-16M-type_MADS family protein