PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06346.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22499.2 Da    PI: 8.9042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-201971456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                + +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  PHU06346.1 19 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 71
                55699***********************************************9 PP
2HD-ZIP_I/II120.96.7e-3918109293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ lke
   PHU06346.1  18 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVVSREKQKLQDEVLALRAILKE 109
                  9**************************************************************************************88875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MDNNNNNNFV FNQHQLDKKK RLSSDQLESL ENSFQEEIKL DPDRKMKLAK ELGLQPRQIA  60
VWFQNRRARW KAKQLERLYD SLKQDYDVVS REKQKLQDEV LALRAILKEQ ATKKQVNSTV  120
YTEISGEETV ESTSMPSSNK TITRAITTSS HQNNNIINNN NNNSNMAECS YVYNVVDGLN  180
PVMPPYWASL PTYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11847KKKRLSSDQLESLENSFQEEIKLDPDRKMK
26674RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-52HD-ZIP family protein