PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06348.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 373aa MW: 42332.2 Da PI: 6.6327

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73	5.1e-23	2	113	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+er f +sp+qC++k+++lnkryk+++++ +k+ ++ PHU06348.1 2 KWTDNMVKLLIMVVYYIGDEVGSEGnnnnnndpsgkkkgssgggggvgvlQKKGKWKSVSRAMMERSFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 100 7************9999988643356788899999999******************************************************559 PP trihelix 74 essstcpyfdqle 86 +++++ +++ ++ PHU06348.1 101 RVVENQCLLETMD 113 9999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MKWTDNMVKL LIMVVYYIGD EVGSEGNNNN NNDPSGKKKG SSGGGGGVGV LQKKGKWKSV 60 SRAMMERSFY VSPQQCEDKF NDLNKRYKRV NDILGKGTAC RVVENQCLLE TMDHLSPKMK 120 EEVKKLLNSK HLFFREMCAY HNSCGHNNAA GAGAGAGAGG ASGSSVVAEA ANSQAQKRCL 180 HSSENANARI GASSLVKVAS GENDDEEEAD EDEEDDDDEV SGARGHDHDD HHHHEDDDDI 240 DERSRKRQRK LGTSSPMVQQ LSTELANVVQ DRERSPLEKR QWMKTRMMQL EEQHVGYMYQ 300 TFELQKQRLK WEKFISKKER EMEREKLMNE RKKLENERMV LLLKQKELEL LDFLQYHPNN 360 NNHRNSDPSS VTG

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MKWTDNMVKL LIMVVYYIGD EVGSEGNNNN NNDPSGKKKG SSGGGGGVGV LQKKGKWKSV  60
SRAMMERSFY VSPQQCEDKF NDLNKRYKRV NDILGKGTAC RVVENQCLLE TMDHLSPKMK  120
EEVKKLLNSK HLFFREMCAY HNSCGHNNAA GAGAGAGAGG ASGSSVVAEA ANSQAQKRCL  180
HSSENANARI GASSLVKVAS GENDDEEEAD EDEEDDDDEV SGARGHDHDD HHHHEDDDDI  240
DERSRKRQRK LGTSSPMVQQ LSTELANVVQ DRERSPLEKR QWMKTRMMQL EEQHVGYMYQ  300
TFELQKQRLK WEKFISKKER EMEREKLMNE RKKLENERMV LLLKQKELEL LDFLQYHPNN  360
NNHRNSDPSS VTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-62	Trihelix family protein