PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06385.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 543aa    MW: 62272 Da    PI: 7.1942
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.49.3e-29116201187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g+ r+ k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  PHU06385.1 116 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYLRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 201
                 8*************************************999*****************************98..55667*******85 PP
2trihelix552.2e-17406485273
    trihelix   2 WtkqevlaLiearremeerlrr........gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                 W ++e+  Li++r++me+r+++        +  +  lWee+s+km+  g+ +s+++Ck+kw+++n +  k+++ +k+++s
  PHU06385.1 406 WLESEITRLIQLRTSMESRFQElgissrddQDDEHVLWEEISAKMAILGYDKSATMCKNKWSSINSYLMKCNKKRKDQNS 485
                 *********************854433322358999*************************************9998633 PP
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    
MEDQYGMADL RQYMNGGRPI FGSIQQVPPE LLPVTAHQQR HRNLGPGQYD MVMGMAHGLT  60
TGTTTNHHQH HHQHEFLTDS SPVAATAATG TTTTSAGFSG MDQIETGGGG GDGSGRWPRQ  120
ETLTLLEIRS RLDSKFKEAN QKGPLWDEVS RIMSEEHGYL RTGKKCREKF ENLYKYYKKT  180
KEGKAGRQDG KHYRFFRQLE ALYGETSNNI SSSASDALHQ GSHFPYNRVS NINQEPHNFH  240
HHNQAPKISD SLSLSNSSEF NTSSSDDSDQ DKMSKKRRPG KRSLKAKIKD FIDGQMRKLM  300
EKQEAWLEKM MKMIEHKEQE RILREEEWRN QETIRMEKEQ RFWANERAWI EARDAALMEA  360
VHKLSTGKDL RSTSSSNPRH AEDMVETLGQ NDKSDDVTHG LKDDNWLESE ITRLIQLRTS  420
MESRFQELGI SSRDDQDDEH VLWEEISAKM AILGYDKSAT MCKNKWSSIN SYLMKCNKKR  480
KDQNSTSLLC YNSNVQINNQ YYEADGSSSS FRYLMGDNHH HNQNLWENYE LKLSKGGDGG  540
GNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275302KKRRPGKRSLKAKIKDFIDGQMRKLMEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-115Trihelix family protein