PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06462.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 206aa MW: 24193 Da PI: 5.6989

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	7.8e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W eEde+l+ +v lG ++W++ a+ g++R++k+c++rw +yl PHU06462.1 8 KGPWLDEEDERLAFVVSILGERHWDALAKASGLRRSGKSCRLRWMNYL 55 79********************************************97 PP
2	Myb_DNA-binding	53.9	4.2e-17	63	106	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kqlG++ W++Ia+ ++ gRt++++k++w+++l PHU06462.1 63 QITEDEENLIIKLQKQLGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106 569***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MQEEKLRKGP WLDEEDERLA FVVSILGERH WDALAKASGL RRSGKSCRLR WMNYLRPNLK 60 HGQITEDEEN LIIKLQKQLG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKA LIYEQECFGS 120 NNTSGDSQPK LSFAKDDNCQ SFDDGEEESS RLLDWMIPSW TYEQSQMEHH MYLCKILNLC 180 SCNYSSQDEN ISSTWDDASS SSIWEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	2e-52	MYB family protein