PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06633.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17522.2 Da    PI: 10.0527
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.9e-16352251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ie++    vt+skR++g+ KKA+E S+L++a+v v+++ ++gk + yss
  PHU06633.1  3 LIEDNKAHIVTLSKRKKGLCKKAKEYSTLTGADVGVVLITPSGKPHFYSS 52
                6999999*************************************998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MKLIEDNKAH IVTLSKRKKG LCKKAKEYST LTGADVGVVL ITPSGKPHFY SSTSIEKITD  60
KFLKLKQDDH QRDHDDVGKS NVFETFEDLR KEVQTLNEKE KERILRYKIM HPHSEVPPDK  120
HRLEQLEAIK SRLDKIKNEK KRLCSSQANQ V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-15M-type_MADS family protein