PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU06636.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17667.2 Da    PI: 7.834
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU06636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.2e-16350249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ie++   + t+skR++g++KKA+E S+L++a+v v+++ ++gk + y
  PHU06636.1  3 LIEDNEAHTATLSKRKKGLFKKANEYSTLTGADVGVVLITTSGKSHSY 50
                6999999*************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MKLIEDNEAH TATLSKRKKG LFKKANEYST LTGADVGVVL ITTSGKSHSY GSISIEKITD  60
KFLELKQDDR QSDHDDVGKL DVFETFEDLR KEVQALNEKE KERIPDKHRL EQLEAIKLRL  120
DKIKKRKRKG LVLSKLIKFD LNGELELEEE ERS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118127LRLDKIKKRK
2124129KKRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-15M-type_MADS family protein