PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06742.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 177aa MW: 20377.4 Da PI: 9.8656

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.1	1.5e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++k rqv f+kRr+g+lKKA+ELS+LCd++v v+i+s++g+l+e++s PHU06742.1 9 KRIQDKNCRQVAFCKRRKGLLKKAKELSILCDVDVGVVIISNRGRLHEFAS 59 79***********************************************86 PP
2	K-box	25.3	6.2e-10	98	160	29	92
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 e Lq++ R++ e+++ + +L +Le++L ++l +iRs+K++llle+ ++l + + +++++ + PHU06742.1 98 ELLQETERQIE-ENVDGVTATDLIHLENELLTALVQIRSRKEKLLLEEKKQLENNMARMKKNRR 160 67888888876.9************************************999998888877655 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKELSILCD VDVGVVIISN RGRLHEFAST 60 NSLTGILQRY ESHASAEKEI SAEIQDAESK FSSMTTGELL QETERQIEEN VDGVTATDLI 120 HLENELLTAL VQIRSRKEKL LLEEKKQLEN NMARMKKNRR VNEKSDLPQQ RVTLNFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65060.1	5e-32	MIKC_MADS family protein