PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06844.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 451aa MW: 50101.3 Da PI: 7.1598

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd+ l++av + g++Wk+Ia+ ++ R++ qc +rwqk+l PHU06844.1 59 RGGWTPEEDDTLKKAVSVYRGKCWKKIAELFP-DRSEVQCLHRWQKVL 105 789***************************.**********986 PP
2	Myb_DNA-binding	57.7	2.6e-18	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l PHU06844.1 111 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************99******.***********97 PP
3	Myb_DNA-binding	49.9	7.2e-16	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l+da++ +G++ W+ Ia+ ++ gR ++ +k++w++ PHU06844.1 163 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRADNGIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MDELQVEECC IENKQSVAAS SSSVSENSGS VNLRSPAVSS PTPVSPTHRK TTGPIRRARG 60 GWTPEEDDTL KKAVSVYRGK CWKKIAELFP DRSEVQCLHR WQKVLNPELV KGPWTREEDD 120 KIIELVAKYG PIKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI 180 HGNKWAEIAK VLPGRADNGI KNHWNSSLRK KLDFYLATGN LPSVKSEELL VCSIKTSEAA 240 DVVSSGAIDI CKIENGWQVT EINGGPQAES TDSEIVRLEA QSPEEDAIQH IKQSTESENR 300 CNGWNIDSAV GRLQVFEAPF PCEISTCGRL YYEPPRSESC IPLDSDLLNI GWAQCASDAS 360 PSPSPNGFFT PPSTKDHSLY AQTPESVLRT AARSFNTPSI LRKRKSQGKL STPTNKMRKS 420 DGDFCKDKLI DACDKVQFDS SDKSSMDNGV S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MDELQVEECC IENKQSVAAS SSSVSENSGS VNLRSPAVSS PTPVSPTHRK TTGPIRRARG  60
GWTPEEDDTL KKAVSVYRGK CWKKIAELFP DRSEVQCLHR WQKVLNPELV KGPWTREEDD  120
KIIELVAKYG PIKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI  180
HGNKWAEIAK VLPGRADNGI KNHWNSSLRK KLDFYLATGN LPSVKSEELL VCSIKTSEAA  240
DVVSSGAIDI CKIENGWQVT EINGGPQAES TDSEIVRLEA QSPEEDAIQH IKQSTESENR  300
CNGWNIDSAV GRLQVFEAPF PCEISTCGRL YYEPPRSESC IPLDSDLLNI GWAQCASDAS  360
PSPSPNGFFT PPSTKDHSLY AQTPESVLRT AARSFNTPSI LRKRKSQGKL STPTNKMRKS  420
DGDFCKDKLI DACDKVQFDS SDKSSMDNGV S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	402	428	RKRKSQGKLSTPTNKMRKSDGDFCKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-121	MYB family protein