PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06850.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 361aa MW: 41297 Da PI: 9.636

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd ll +v+q+G++ W++++++m+ ++R +k+c +rw +yl PHU06850.1 4 RQRWRSEEDALLRAYVRQYGPKEWHLVSQRMNtpLNRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	37.6	5.1e-12	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + PHU06850.1 59 KGSLTEEEQHLVIQLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MRERQRWRSE EDALLRAYVR QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQHLV IQLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKENNKVVDP 120 VDEGKYDHIL ETFAEKIVKE RSVPGLLMAT SNGGFLHTDA PTSTPQTLLP PWLSNSSAPS 180 TVRSSSPSVT LSLSPSTVPP TPTPSIPWLQ TDRGPENAPL ILTSFPHHGV APPCGENPFI 240 TELAECCKEL DEGHRSWTAH KKEAAWRLRR VELQLESEKA NKVREKMEEI EAKMKALREE 300 QKATLDRIDA EYKDQLAGLR RDAEAKEQKL AEQWASKHLR LAKFLEQMGC QSRLAEPNGG 360 R

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MRERQRWRSE EDALLRAYVR QYGPKEWHLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQHLV IQLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKENNKVVDP  120
VDEGKYDHIL ETFAEKIVKE RSVPGLLMAT SNGGFLHTDA PTSTPQTLLP PWLSNSSAPS  180
TVRSSSPSVT LSLSPSTVPP TPTPSIPWLQ TDRGPENAPL ILTSFPHHGV APPCGENPFI  240
TELAECCKEL DEGHRSWTAH KKEAAWRLRR VELQLESEKA NKVREKMEEI EAKMKALREE  300
QKATLDRIDA EYKDQLAGLR RDAEAKEQKL AEQWASKHLR LAKFLEQMGC QSRLAEPNGG  360
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-144	MYB family protein