PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU07775.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 479aa MW: 53659 Da PI: 6.2429

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU07775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l PHU07775.1 29 KGPWTTTEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 76 79******************************************9986 PP
2	Myb_DNA-binding	45.8	1.4e-14	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ +E+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++ PHU07775.1 82 KGAFSIDEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 125 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MAPNGGGVNK NNNGTSIGRN HNTRQVLKKG PWTTTEDAIL MEYVKKHGEG NWNAVQRNSG 60 LMRCGKSCRL RWANHLRPHL KKGAFSIDEE RLIVELHAKL GNKWARMAAQ LPGRTDNEIK 120 NYWNTRLKRR QRAGLPIYPQ DIQPQNYQQD QNQQHSTNIP SPFDNNHQNS NYNNNNSPLS 180 LLDIFNPSTM KPSRNIIPHQ YQFNNNNPTS SFLTNTNNIN NQVKFFRDPR VSLSLTLASS 240 MKNSQLPSMI APVPNNFSQG YSSSIPAPPL QHNYPNFTTT TRPFPGISSN PNGLILGMGT 300 EQRSIQLSMP ETTTTTTSSD HADNNYVVER GLSRGNSGLL EDLLEESQTL TRGEKIEENC 360 NVDNEDNKGK LVWEEYGLTE EAADAILTEE STYNFAHTDD NNATQSKHSE DSSSLNSSSG 420 ITTKEASLEL GNQVDDDIMR FLDNFPLGVP VPDWCDDQQN TSNAQSFECD QIQLSKSSS

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MAPNGGGVNK NNNGTSIGRN HNTRQVLKKG PWTTTEDAIL MEYVKKHGEG NWNAVQRNSG  60
LMRCGKSCRL RWANHLRPHL KKGAFSIDEE RLIVELHAKL GNKWARMAAQ LPGRTDNEIK  120
NYWNTRLKRR QRAGLPIYPQ DIQPQNYQQD QNQQHSTNIP SPFDNNHQNS NYNNNNSPLS  180
LLDIFNPSTM KPSRNIIPHQ YQFNNNNPTS SFLTNTNNIN NQVKFFRDPR VSLSLTLASS  240
MKNSQLPSMI APVPNNFSQG YSSSIPAPPL QHNYPNFTTT TRPFPGISSN PNGLILGMGT  300
EQRSIQLSMP ETTTTTTSSD HADNNYVVER GLSRGNSGLL EDLLEESQTL TRGEKIEENC  360
NVDNEDNKGK LVWEEYGLTE EAADAILTEE STYNFAHTDD NNATQSKHSE DSSSLNSSSG  420
ITTKEASLEL GNQVDDDIMR FLDNFPLGVP VPDWCDDQQN TSNAQSFECD QIQLSKSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	5e-68	MYB family protein