PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU07804.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 250aa    MW: 28514.8 Da    PI: 9.9392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU07804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.4e-151559145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie +  r+vtfskRr g+ KKA+EL   Cd+++ +i fs+tg+
  PHU07804.1 15 KKIEKQDDRYVTFSKRRSGLYKKASELVKECDVDIGMIFFSPTGN 59
                689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MENKKGKGRQ KIPMKKIEKQ DDRYVTFSKR RSGLYKKASE LVKECDVDIG MIFFSPTGNP  60
FAFFHPTVDA VVSRFQNPDL KLSESTQLVA AQARNRVNGL QSGLDELDLR EDIAIANKNV  120
YDKVLETTQK KRIDEGEQRT IARAHTSSSN GEDRKVIISP KLSWADEIEA MEVDVPKVRK  180
FLSILLKRWD SKVNAITEAK DLNKMVMDEL IGNPKTYEML KKLRKLKDEP KAEKYLVLNA  240
AKDIPSAEDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-26M-type_MADS family protein