PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU07820.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19949.5 Da    PI: 8.4698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU07820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-141563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien+   + +fskRr g+ KKA EL   Cd+++ +ii+s+tgk + +
  PHU07820.1 15 KKIENQADLYASFSKRRSGLYKKARELVRECDVDIGMIILSPTGKPHSF 63
                68******************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MEDKKGKGRR KIPMKKIENQ ADLYASFSKR RSGLYKKARE LVRECDVDIG MIILSPTGKP  60
HSFFHPTVDA IISRFQNPDI QLSISTQLVA AHARHRVNEL NNRLEELDTT KNAAVFQKNV  120
YDEVMETRQK SRWESVEELS EEELTKFEAW LNTVGSDLQN RLNQLENGAS SSQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-24M-type_MADS family protein