PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU08143.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 240aa    MW: 26223.1 Da    PI: 9.3493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU08143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
       PHU08143.1 126 PWTEDEHRKFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 170
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRKCSHCGY IGHNSRTCST LKCAISGSNF IGGLKLFGVQ LDTANSSSSS SSSSSFSSHN  60
LTKSFSLDCL SLTNSHIGHS HLSSSLSPSP SINESCEKST TSINNNGYLS DGIGVGCVGE  120
RKKGAPWTED EHRKFLIGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQSSINKK  180
KRRSSLFDMA RINNKFEDCQ ENSHWIYGSQ NSHHNEVPNN KSISSNGNID LELSLSNNIV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-54MYB_related family protein