PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09024.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 474aa MW: 54245.6 Da PI: 6.4524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	213	256	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+ +L PHU09024.1 213 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 256 589*******************66......************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MGTRVLVPSP LGLLELFSTQ QLPEDEEVIE FVSAQCNIYV EQQAMMNSSF SDGVEESTSK 60 PFPLEGDDHI KVSQNHYQQT VSPAATSRGH SDNLSYDFPL KRKHLDTSSM NFLPQLNTYS 120 TPEVYNKTGG NMLFDQRTSD VTHFSENRYM SEMDAYLQKQ MMRSSSTQSA IDDESVKHDN 180 GRSNSGSDSD QNEEEDDPKY RRRNGKGPQS KNLMAERKRR KKLNERLYAL RALVPKISKL 240 DRASILGDAI EYVMELEKQV KDLQLELEEH SDDEGRRNQD QIHPDVLSHN GTKNGTKSEN 300 GKRSNGNGHR ELSTNSNGST DPFRKIQEVE ENAKLQQMEP QVEVAQLDGN EFFVKVFREH 360 KTGGFVRILE ALNSLGLEVT NVNATRHTCL VSNIFKVEKR DNEIVQADHV RDTLLELTRN 420 PSRGWSEMAR ASSDNNANGC TEYLHNQHHH HDHHLDNNHH KQANSHRYHR HHHH

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MGTRVLVPSP LGLLELFSTQ QLPEDEEVIE FVSAQCNIYV EQQAMMNSSF SDGVEESTSK  60
PFPLEGDDHI KVSQNHYQQT VSPAATSRGH SDNLSYDFPL KRKHLDTSSM NFLPQLNTYS  120
TPEVYNKTGG NMLFDQRTSD VTHFSENRYM SEMDAYLQKQ MMRSSSTQSA IDDESVKHDN  180
GRSNSGSDSD QNEEEDDPKY RRRNGKGPQS KNLMAERKRR KKLNERLYAL RALVPKISKL  240
DRASILGDAI EYVMELEKQV KDLQLELEEH SDDEGRRNQD QIHPDVLSHN GTKNGTKSEN  300
GKRSNGNGHR ELSTNSNGST DPFRKIQEVE ENAKLQQMEP QVEVAQLDGN EFFVKVFREH  360
KTGGFVRILE ALNSLGLEVT NVNATRHTCL VSNIFKVEKR DNEIVQADHV RDTLLELTRN  420
PSRGWSEMAR ASSDNNANGC TEYLHNQHHH HDHHLDNNHH KQANSHRYHR HHHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	222	RRRNGKGPQSKNLMAERKRRKK
2	216	223	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-88	bHLH family protein