PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU09196.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 389aa MW: 43317.2 Da PI: 8.5272

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU09196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.2e-38	44	141	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rr+Ca+dC+lapyfpa+++k+f n+hklFG+sn+lk+lk++++ ++++am++l++eA++ra dPv G++++il+l++q++ +ael+ + PHU09196.1 44 ACAACKYQRRRCAPDCPLAPYFPAKRQKDFLNAHKLFGVSNILKVLKNISPFQKDNAMKALIFEANIRAGDPVGGCYRTILNLHRQINLCQAELQFVY 141 7********************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MTNVVNNNTQ NISYLPSSLT TRSSTAAARV ASQGGGSGGN GSQACAACKY QRRRCAPDCP 60 LAPYFPAKRQ KDFLNAHKLF GVSNILKVLK NISPFQKDNA MKALIFEANI RAGDPVGGCY 120 RTILNLHRQI NLCQAELQFV YREIFRVKAA AIQVQPNINT KACFLNEINN SILGFDFSPI 180 PCLHEFDIST SIGEGSNSQI VEGERLEGFN NEKFEAKTVM SICNDKQSIV EHGYFKPYFG 240 NFHDYKGKGI ATELRNRPFD SSYIVIDSGI TFGLKWLRCS ISAATVIFEY LHLNFCSCSV 300 RVSWGICPNG SSVLYSRGFV RLEYHWIFII VSSESDDRLR GKMPPHRACR NNEQPQPVDP 360 LSEHVSHAKF QEDFQALAQA VTANAQANT

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MTNVVNNNTQ NISYLPSSLT TRSSTAAARV ASQGGGSGGN GSQACAACKY QRRRCAPDCP  60
LAPYFPAKRQ KDFLNAHKLF GVSNILKVLK NISPFQKDNA MKALIFEANI RAGDPVGGCY  120
RTILNLHRQI NLCQAELQFV YREIFRVKAA AIQVQPNINT KACFLNEINN SILGFDFSPI  180
PCLHEFDIST SIGEGSNSQI VEGERLEGFN NEKFEAKTVM SICNDKQSIV EHGYFKPYFG  240
NFHDYKGKGI ATELRNRPFD SSYIVIDSGI TFGLKWLRCS ISAATVIFEY LHLNFCSCSV  300
RVSWGICPNG SSVLYSRGFV RLEYHWIFII VSSESDDRLR GKMPPHRACR NNEQPQPVDP  360
LSEHVSHAKF QEDFQALAQA VTANAQANT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-34	LBD family protein