PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU09352.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23326.5 Da    PI: 9.6908
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU09352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.5e-261059150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk nr vt+skRr+g++KKA+ELSvLCd+++++++fs+tg+l  +s
  PHU09352.1 10 KRIENKANRGVTYSKRRKGLIKKAYELSVLCDTDISLLMFSPTGRLTSFS 59
                79*********************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MMGRAKIEIK RIENKANRGV TYSKRRKGLI KKAYELSVLC DTDISLLMFS PTGRLTSFSP  60
KQRMIRGTNP AVAASTTSQI RQELKQEINA LLQQIHVAEE KLSMYEPDPG KMTSMEELEA  120
YGPKFQNGSK RRESNEADLL AYDDAFNQPQ SFDSSVNYGT TSERNNMFST IMVPSNIKGS  180
SSSLNVEKIQ APNDNSILSW PYISHFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.18e-34MIKC_MADS family protein