PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU09910.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20050.7 Da    PI: 10.3671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU09910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-142874248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +i  ++ r  tfskRr+g++KKA+E   +++ +va i+fss+g+ y+
  PHU09910.1 28 KITKQTSRMATFSKRRKGLFKKAKEFESMTGSRVASIVFSSSGRPYT 74
                688999*************************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MQNLLVEEEE KKKLRRMGTG KKKIEIQKIT KQTSRMATFS KRRKGLFKKA KEFESMTGSR  60
VASIVFSSSG RPYTCGDVNS VIQKHFSGIS SSRCTEPSTS GLNSHHSNSE DVVVAFGDSS  120
GSRWSSTPRR NGLRHWVESI DVEGCQNLNQ LLMLKQQLEG TREKIASIED SESFQALFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11251KKLRRMGTGKKKIEIQKITKQTSRMATFSKRRKGLFKKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-11M-type_MADS family protein