PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU10071.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 1167aa MW: 129086 Da PI: 6.4402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU10071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7.1e-06	154	175	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C Cgk F+r nL+ H+r H PHU10071.1 154 FCDFCGKGFKRDANLRMHMRAH 175 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence
MSFPGNLRHI PTNTNRPLFA AQIIGDDPLL NLSAVQARMD SLQKFLSDSV NSNTLLGQHH 60 MNMVSDEITS AIHQIIVNGA SLLSSNQLPP PPPPSSQELE INPKSNHPEF DRRDIEDKVV 120 SESKVEVLDE GEGGSDWETI ELDAVELLAE HIHFCDFCGK GFKRDANLRM HMRAHGNQYK 180 TAEALSKPEK CRESSSNKRR RFSCPFVGCA RNKTHCKFRP LKSVICVKNH FKRSHCPKMY 240 SCTRCNKKNF SVLADLKSHL KHCGETKWKC SCGTSFSRKD KLFGHMALFE GHMPAVVGEM 300 AAAAAFENGE EVGTDIFGGP GNGLLDVRTG SDNGFLDRLM LDGFESIDSY CFQDLLGSSS 360 PNGLNTVEDT LLDDLQELQV RVQIRSKMFS QRSIGNNLST SSEVADQKIM LLQLRNNLIY 420 DSEMSTKLVK WNQRIDCCQW EGVICNSEGQ VIGLDLSAEA FSGSINPLAN LKFLSIIRLD 480 GNNLSAPIRE FFADFSNLTV LSLSSCNLIG EVPQKIFQVP TLHTIDLPVN EMLGGSLPEF 540 PSNGSLQTLV LTSTKFAGRL PESIGNLGKL ARVELRACGF TGLIPAFMEN LTQLVYLDFE 600 LNSFTASLFY LPSLSNLYLS NNKFSGQITG LQNVISPITS FELSSNKLEG PIPEFFFEPH 660 DLVGLSLSSN KFNGTVQLKK FTELNKLVNL DMSHDSLSVD TNVSESDLAL LPQLNSFMLA 720 SCNLQNISFL KNQSKLLMLD LSKNQLTGEI PNWLVEISDG LLRFLNLSFN QFTHFQEPYT 780 FGLLNFLDVH SNLLAGVIPL PPRAAAYIDL SNYKFATLIP PDFGNYLATA QYLSIANNKV 840 IGSIPSSICN SSYLEVLDLS NNSLNDRIPS CLAEKSSTLK VLNLGKNNLI GNIPEKFSYN 900 CELKSLDLSQ NHLTGLLPRS LSKCTKLKVL NLGNNKIKDT FLCWLRSICD LRVLVLRFNG 960 FNGNIDCSRV SSNWNALRII DLASNNLGGF LPRSSFLELN AMMVDPSLAH SRSDILHFES 1020 QTVRSVYYQD SVTLSLKGQD VTLTKILLFF TSIDFSSNNF VGIIPETVGD LKSLYLLNTF 1080 GDLKQLGSLD LSFNKLGGNI PEKLASLTSL SFLNLSYNEL VGMIPRGNQL LTFEESSFPG 1140 NKGLCGFPLN NNNNKPSVFP PSGVWGG

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence

MSFPGNLRHI PTNTNRPLFA AQIIGDDPLL NLSAVQARMD SLQKFLSDSV NSNTLLGQHH  60
MNMVSDEITS AIHQIIVNGA SLLSSNQLPP PPPPSSQELE INPKSNHPEF DRRDIEDKVV  120
SESKVEVLDE GEGGSDWETI ELDAVELLAE HIHFCDFCGK GFKRDANLRM HMRAHGNQYK  180
TAEALSKPEK CRESSSNKRR RFSCPFVGCA RNKTHCKFRP LKSVICVKNH FKRSHCPKMY  240
SCTRCNKKNF SVLADLKSHL KHCGETKWKC SCGTSFSRKD KLFGHMALFE GHMPAVVGEM  300
AAAAAFENGE EVGTDIFGGP GNGLLDVRTG SDNGFLDRLM LDGFESIDSY CFQDLLGSSS  360
PNGLNTVEDT LLDDLQELQV RVQIRSKMFS QRSIGNNLST SSEVADQKIM LLQLRNNLIY  420
DSEMSTKLVK WNQRIDCCQW EGVICNSEGQ VIGLDLSAEA FSGSINPLAN LKFLSIIRLD  480
GNNLSAPIRE FFADFSNLTV LSLSSCNLIG EVPQKIFQVP TLHTIDLPVN EMLGGSLPEF  540
PSNGSLQTLV LTSTKFAGRL PESIGNLGKL ARVELRACGF TGLIPAFMEN LTQLVYLDFE  600
LNSFTASLFY LPSLSNLYLS NNKFSGQITG LQNVISPITS FELSSNKLEG PIPEFFFEPH  660
DLVGLSLSSN KFNGTVQLKK FTELNKLVNL DMSHDSLSVD TNVSESDLAL LPQLNSFMLA  720
SCNLQNISFL KNQSKLLMLD LSKNQLTGEI PNWLVEISDG LLRFLNLSFN QFTHFQEPYT  780
FGLLNFLDVH SNLLAGVIPL PPRAAAYIDL SNYKFATLIP PDFGNYLATA QYLSIANNKV  840
IGSIPSSICN SSYLEVLDLS NNSLNDRIPS CLAEKSSTLK VLNLGKNNLI GNIPEKFSYN  900
CELKSLDLSQ NHLTGLLPRS LSKCTKLKVL NLGNNKIKDT FLCWLRSICD LRVLVLRFNG  960
FNGNIDCSRV SSNWNALRII DLASNNLGGF LPRSSFLELN AMMVDPSLAH SRSDILHFES  1020
QTVRSVYYQD SVTLSLKGQD VTLTKILLFF TSIDFSSNNF VGIIPETVGD LKSLYLLNTF  1080
GDLKQLGSLD LSFNKLGGNI PEKLASLTSL SFLNLSYNEL VGMIPRGNQL LTFEESSFPG  1140
NKGLCGFPLN NNNNKPSVFP PSGVWGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	1e-70	C2H2 family protein