PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU10367.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23170.6 Da    PI: 9.1838
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU10367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-211763448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHU10367.1 17 KNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                89***********************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MPRMSKGRKK VEIVEMKNES NMQVTFSKRR ASLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDMFLGRD LPPPNDDDRH NHLIRAHQNT DQRRLNKEVM DMQESLQKEK  120
AVGKSLLVSG RGAYDRVCEY PIIEGLSLSQ LEQLKEALEA QKRKVEFEAK LQQMGSAPLP  180
FLTFGSALSP SGGDGASSSH GPNVGAPFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-42M-type_MADS family protein