PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU10374.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15854.2 Da    PI: 9.7487
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU10374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-142170149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                k+i n+  r+vtfsk r g++K A+EL++L + e+ ++i s + + l+++
  PHU10374.1 21 KPIYNQNSRHVTFSKHRLGLFKRASELCILAGGEIVILIQSLKpQSLFTF 70
                6899**********************************999542566666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MNVNTNTTVK KTQGRRKIAI KPIYNQNSRH VTFSKHRLGL FKRASELCIL AGGEIVILIQ  60
SLKPQSLFTF GHPNADVVID CYLTGKYSSS LSTSSIDKFN LQQNNQYYSQ MCKDLEVEKK  120
RENYEDVKMV NIDNNLYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-19M-type_MADS family protein