PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU10376.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 256aa    MW: 28853 Da    PI: 10.4534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU10376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.5e-201663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr  ++KKA+EL++LC++e+a+i+fs+  k++ +
  PHU10376.1 16 KIEVKNHLQVTFSKRRSDLFKKASELCTLCGVEIAIIVFSPGHKVFSF 63
                58888899*********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MAKKPSMGRQ KIKIAKIEVK NHLQVTFSKR RSDLFKKASE LCTLCGVEIA IIVFSPGHKV  60
FSFGNPNVES LIDRFLLRNN TYNNPIANNS LQLVEAHRNA SVRGLNLQLT QILGKVEIEK  120
KRGESLDQMR KNSQSQCWWE APISQLDLQE LEQLKDSVEV LKQYVTNNQA SKFMVNETAN  180
SSTYFGDNRS IRIGRGQGHK YSTMSVNERM ESIGKKYTHE CETSAIGKGL GQRPRSLSSS  240
LGIAGKKVES LNKRHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-51M-type_MADS family protein