PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU11041.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 384aa MW: 42605 Da PI: 6.8943

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU11041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.9	4.2e-08	61	106	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC C +H+ H++vp+ PHU11041.1 61 VWVCEVCEQAAASVTCRADAAALCVACDRDIHSAnplsqrHERVPV 106 689*****9*******************66899999999986 PP
2	CCT	69.8	7.1e-24	303	346	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PHU11041.1 303 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRN 346 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGMLREGSNC FPGVWIGGGA AGMAKPCGCC HLAAALVFCR TDNTFVCLAC DTHQHARHER 60 VWVCEVCEQA AASVTCRADA AALCVACDRD IHSANPLSQR HERVPVVPFY HPIESVVKST 120 AATLLVDLTT TRDIAPCLGH HEESYNNNTK QWIPPNTITT SKLPLVTEMK PSMDFIFSDS 180 ENSFLDFDYS SVVSIDTQSQ VPHYNPSNDS VVPVQTTTTT TTTSAIKPLP FHHQEKHFEI 240 DFTQSHIKSY NTPSISVSSS SLDVGIVPDG SSISEISYPY MKNVNNNVDL PNLPGEKLLG 300 LDREARVLRY REKKKNRKFE KTIRYASRKA YAETRPRIKG RFAKRNDGDG ARVINCDDID 360 QIFSDGDFIG HDSRYGIVPS FLVN

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGMLREGSNC FPGVWIGGGA AGMAKPCGCC HLAAALVFCR TDNTFVCLAC DTHQHARHER  60
VWVCEVCEQA AASVTCRADA AALCVACDRD IHSANPLSQR HERVPVVPFY HPIESVVKST  120
AATLLVDLTT TRDIAPCLGH HEESYNNNTK QWIPPNTITT SKLPLVTEMK PSMDFIFSDS  180
ENSFLDFDYS SVVSIDTQSQ VPHYNPSNDS VVPVQTTTTT TTTSAIKPLP FHHQEKHFEI  240
DFTQSHIKSY NTPSISVSSS SLDVGIVPDG SSISEISYPY MKNVNNNVDL PNLPGEKLLG  300
LDREARVLRY REKKKNRKFE KTIRYASRKA YAETRPRIKG RFAKRNDGDG ARVINCDDID  360
QIFSDGDFIG HDSRYGIVPS FLVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-84	CO-like family protein