PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU11413.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 200aa    MW: 22542.7 Da    PI: 8.2142
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU11413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY186.41.5e-5761564160
       YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvssek 100
                 + +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q  +++s  +++++ +   + e +++  + ++ ++++ +         
  PHU11413.1   6 DVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSTSSWQNHQVQVPnpTAPEYRMDFGSSTKCTMNRMT--------- 95 
                 5689******************************************99988777666643333322211333333332222222222222......... PP

       YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                 + +  + ++ +  + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn 
  PHU11413.1  96 MRTPITSNIHHEERiVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNM 156
                 22333333333333389******************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MASCIDVASE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS  60
TSSWQNHQVQ VPNPTAPEYR MDFGSSTKCT MNRMTMRTPI TSNIHHEERI VNRPPEKRQR  120
VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNMGNDR SITLFWCSGH TSLTFTLDSC  180
WRATIKPNLL VGAENYKLLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-68YABBY family protein