PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12004.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GeBP

Protein Properties

Length: 404aa MW: 44737.7 Da PI: 5.0362

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.9	7.2e-34	156	247	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++lwse+D++++L+G++++k+++g++p +d++afyef++++++++vsksql++KirrLKkKf + vk+ g++p fsk++d ++e+s++iWg PHU12004.1 156 PRSLWSEDDQVAILKGMVEYKQEKGTEPNADMSAFYEFIRGKLQADVSKSQLSDKIRRLKKKFMTSVKD---GEQPGFSKTQDWLVYEYSNQIWG 247 6789***********************************************************9999...********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MAPKAKSRLV DQPPSASSSE EEQVEESQEE EEQEEQSEEG QEEESGEETE EDEPPKKPIT 60 QKSLQTQPKP VHSSSESGTE NGSGSESQTD SGQSLPSPSA SDFTVKPSVP VKTAVPSKEP 120 AKRPPPQEQA QKESKDSRKK KPKIAEEEEK KASATPRSLW SEDDQVAILK GMVEYKQEKG 180 TEPNADMSAF YEFIRGKLQA DVSKSQLSDK IRRLKKKFMT SVKDGEQPGF SKTQDWLVYE 240 YSNQIWGAPS NNIVKENVSS SANGKAKKAA ADAVKKIAEP NKSGKVSTLN KAKDNEKRKD 300 EEKEKKVAAI EVVKEDIVND DKQDFQSKYP RLAASFESLG GMSMIYPNGT SWLKEKMSSI 360 ASDKAKVLEE KWKKLDDAEA ALILKRLDLI REHCGLVVDG TRGN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MAPKAKSRLV DQPPSASSSE EEQVEESQEE EEQEEQSEEG QEEESGEETE EDEPPKKPIT  60
QKSLQTQPKP VHSSSESGTE NGSGSESQTD SGQSLPSPSA SDFTVKPSVP VKTAVPSKEP  120
AKRPPPQEQA QKESKDSRKK KPKIAEEEEK KASATPRSLW SEDDQVAILK GMVEYKQEKG  180
TEPNADMSAF YEFIRGKLQA DVSKSQLSDK IRRLKKKFMT SVKDGEQPGF SKTQDWLVYE  240
YSNQIWGAPS NNIVKENVSS SANGKAKKAA ADAVKKIAEP NKSGKVSTLN KAKDNEKRKD  300
EEKEKKVAAI EVVKEDIVND DKQDFQSKYP RLAASFESLG GMSMIYPNGT SWLKEKMSSI  360
ASDKAKVLEE KWKKLDDAEA ALILKRLDLI REHCGLVVDG TRGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-21	GeBP family protein