PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12007.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 242aa MW: 27611.8 Da PI: 10.1788

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.2	5.9e-20	99	149	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+++ rq t+sk + + KKA+EL +LCd++va+++fs+tg++ yss PHU12007.1 99 KKIEDSTSRQRTYSKHKDSLVKKANELAILCDTDVALLMFSPTGEVTRYSS 149 68**********************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MKYPGKLLCA VIPMWKREKQ NKRRDGLTLA RNYRSAHKLL PRYGITLSKH LLPHGKNGKE 60 RHDAIWLDNN IRIREKMLAL VANCSSLRSS MGRNKLVMKK IEDSTSRQRT YSKHKDSLVK 120 KANELAILCD TDVALLMFSP TGEVTRYSSR GRCYEPQVEN ISSVQEADAY QEFLLSAMEQ 180 IRSQARLLGG KGYLQTNENV GVKWLRSTQR LPLLQEPVGH TSCEEIDWIA TDRALASGVE 240 QL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	5e-18	M-type_MADS family protein