PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12025.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21116.4 Da    PI: 10.1096
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.2e-21247449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +n+sn qv fskRr+g++KKA+EL++LC+ae+a+++fs+  k+y +
  PHU12025.1  2 KNESNLQVMFSKRRAGVFKKASELCTLCGAEIAIVVFSPGKKVYSF 47
                79******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MKNESNLQVM FSKRRAGVFK KASELCTLCG AEIAIVVFSP GKKVYSFGHP SVELLVDRFL  60
GRNLPPPNND GRHNHLLINH RNVVLRDLNK EVMNMEEILQ MEKARGESIL EIRRRVNGGW  120
WEAPINALNL SQLQQLMEAM GFLKQEQQML TNVGLPFLTF GSALSPNTNG AMASSSHGLN  180
IGTPFSNRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-46M-type_MADS family protein