PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12026.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19117.5 Da    PI: 10.7453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.8e-181862549
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +s+ qvtfskR  g++KK +EL+ LC++e+ +++fs++ k+y +
  PHU12026.1 18 KESKLQVTFSKRCVGLFKKTSELCMLCGVEIVIVVFSPSKKVYSF 62
                56788**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MQRRSKGLQR IDIAKMQKES KLQVTFSKRC VGLFKKTSEL CMLCGVEIVI VVFSPSKKVY  60
SFGHPSVELL VDRFLGRNLP PPNNKGRHNH LLVNHRNAGL RELNKKVMDM EEMFRMEKAR  120
GESILDIRRR ANGGWWEAPI NALNLSQLQQ LMEAKKFLKL DVEKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-43M-type_MADS family protein