PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12047.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 541aa    MW: 60365.7 Da    PI: 6.6488
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.31.3e-1371715411374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+avs+g+l  aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e +   s e l+++++++e++P++kf+++ aN
  PHU12047.1 171 LKQVLIACAKAVSDGELLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHVLYEICPYFKFGYMSAN 266
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHiiDf+i qG QW++++qa+a+Rp+gpp++RiTg+++++s   +   l  +g+rL+k+A++++vpfef++ +a +  d++le+L +
  PHU12047.1 267 GAIAEAMKDENRVHIIDFQIAQGSQWVPMIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGKRLSKLAKTFKVPFEFHP-AAMSGCDVQLENLGI 364
                 **************************************************998899999************************.8999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+++ lh+++desvs+ ++rd++L++vk+lsPkvv++veqe+++n++ F+ rfle+l+yys++f+s++++lpr ++eri+vE+++l+r++v
  PHU12047.1 365 QPGEALAVNFAFTLHHMPDESVSTVNHRDRLLRMVKNLSPKVVTLVEQESNTNTAAFFPRFLETLDYYSSMFESIDMTLPRGHKERINVEQHCLARDVV 463
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++  yr+ee++g+l+lgW++r Lv+ +aW+
  PHU12047.1 464 NIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKTLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 541
                 **************************************************5.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MQASRRRRTA MSNTLYCEPL QKAEAYCLPQ FQTLDSHLSY ISGSHGGNHS LQTYRDRYCM  60
LDSSSATGNY AIYHSPSTTS FSSNGSTTCN QESQPYLSDV HHSPETNYGS PISGSCITDD  120
VADFMHKLKE LETVMLGPEL ESYDNSLPSN IASPEIDSWR QIMLAIPRRD LKQVLIACAK  180
AVSDGELLTA QVLISELRQM VSVSGEPIQR LGAYILEGLV ARLAASGSSI CKSLRCKEPA  240
SFELLSYMHV LYEICPYFKF GYMSANGAIA EAMKDENRVH IIDFQIAQGS QWVPMIQAFA  300
ARPGGPPHIR ITGIDDSTSA YARGGGLDIV GKRLSKLAKT FKVPFEFHPA AMSGCDVQLE  360
NLGIQPGEAL AVNFAFTLHH MPDESVSTVN HRDRLLRMVK NLSPKVVTLV EQESNTNTAA  420
FFPRFLETLD YYSSMFESID MTLPRGHKER INVEQHCLAR DVVNIIACEG IERVERHELL  480
GKWKSRFRMA GFSPYPLSSL VNATIKTLLE SYSDKYRLEE RDGALYLGWM NRDLVASCAW  540
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein