PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12252.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 137aa MW: 15885.1 Da PI: 10.7071

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw +yl PHU12252.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	60.1	4.7e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++ PHU12252.1 67 RGNYTKEEDEIILNLHAQLGNK-WSAIAVHLP-GRSDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence
MVRTPCHDEK GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AIAVHLPGRS DNEIKNHWHT ALKKRANYVS 120 TSSDVSSKKS NKKKNSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	4e-55	MYB family protein