PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12253.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 247aa MW: 28374.4 Da PI: 6.7081

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +++ g+ R++k+c++rw++yl PHU12253.1 14 KGTWTPEEDRKLAAYITEYGSWNWRQLPKYAGLERCGKSCRLRWLNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	60.7	3.1e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia++++ gR+++++k++w++ PHU12253.1 67 RGNYTEEEDEIILNLHAQLGNK-WSAIAAHLP-GRSDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MVRTPCCDEN GRKKGTWTPE EDRKLAAYIT EYGSWNWRQL PKYAGLERCG KSCRLRWLNY 60 LRPNVKRGNY TEEEDEIILN LHAQLGNKWS AIAAHLPGRS DNEIKNHWHT ALKKRANNSG 120 ESSKKCNSKN NIRRSTSVAN KNASPSTSHE NIVLESSQWS PKESSSEDFF SYSNTDYQEQ 180 HKVFQQEALD EITSGSFWTE PFLVESFNTT GTDFLAPPID YCGLVCPPSP FIGHEFLSSF 240 DFDHFNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-57	MYB family protein