PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12255.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 199aa MW: 23239.8 Da PI: 9.844

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +++++G+ +W+ +++ g+ R++k+c++rw ++l PHU12255.1 14 KGTWTPEEDRKLTAYIAKYGSWNWRQLPKYAGLARCGKSCRLRWMNHL 61 799*******************************************97 PP
2	Myb_DNA-binding	60.7	3.1e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde+++++++qlG++ W++Ia++++ gR+++++k++w++ PHU12255.1 67 RGNYTKEEDEIILNLHAQLGNR-WSAIAAHLP-GRSDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MVRTPCYDEN GMKKGTWTPE EDRKLTAYIA KYGSWNWRQL PKYAGLARCG KSCRLRWMNH 60 LRPNVKRGNY TKEEDEIILN LHAQLGNRWS AIAAHLPGRS DNEIKNHWHT KLKKRGTNYA 120 TNSSDESSKK CKNNTKKRYT ESNTNKNTSH NNMQENIVLE SSEWSPKESS SEELSSYSTT 180 NYQQQHKVFQ EEITSGSFW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	9e-59	MYB family protein