PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12257.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 229aa MW: 26631 Da PI: 6.6305

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l +v+++G ++W+ +++ g+ R++k+c++rw ++l PHU12257.1 14 RGAWSEDEDNKLRAYVERFGHPNWRQLPKYAGLMRCGKSCRLRWMNHL 61 89********************************************97 PP
2	Myb_DNA-binding	50.5	4.7e-16	68	111	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+ eE++l+++++k+lG++ W+ Ia+ ++ gR+++++k++w+ + PHU12257.1 68 GNYRLEEEQLIIKLHKELGNR-WSVIAANLP-GRSDNDVKNHWHAH 111 67778**************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MVRTPIIDKN GIKRGAWSED EDNKLRAYVE RFGHPNWRQL PKYAGLMRCG KSCRLRWMNH 60 LRPGLKKGNY RLEEEQLIIK LHKELGNRWS VIAANLPGRS DNDVKNHWHA HLKKRVRLTN 120 CINNSSMSME QFTESTQSGS SQLDERSASM NVVVDTSPTL LPISFPEVSS SDLYSITDWI 180 EEESMEQLPI LSSMELLAAD TFSWTNYPID NFQTESFDHF WTQPFDTFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	3e-53	MYB family protein