PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12308.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24258.7 Da PI: 10.1163

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	80	134	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ + ++ +++eLA+kl+L+ rqV vWFqNrRa+ k PHU12308.1 80 RKKLRLTKEQSTLLEDSFKLHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 134 678899***********************************************98 PP
2	HD-ZIP_I/II	114.4	6.7e-37	80	168	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+ +++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ en+rL+ke +eLr+ PHU12308.1 80 RKKLRLTKEQSTLLEDSFKLHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNGENNRLKKELQELRS 168 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGNDDNEACD TRLTLGLATS DHHILPKQNQ DNHKKITCQN LSIIPLHSSH DGTDKIDGSS 60 SKTCKNYTKF NNESKKIGMR KKLRLTKEQS TLLEDSFKLH TTLAMGQKQE LAAKLKLKPR 120 QVEVWFQNRR ARTKLKQTEV DCEFLKKWCQ SLNGENNRLK KELQELRSIK IDQRIHLQLS 180 KARTLALCSS CRKISRGDTD EKHETGTESG W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-45	HD-ZIP family protein