PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12342.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29294.9 Da    PI: 9.3262
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.1e-134077239
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                + +++ nr+ tf kR++ + KK +EL +LC++++++ii
  PHU12342.1 40 FTQDHKNRKSTFVKRKASLVKKISELAILCGIKACMII 77
                567899*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVHSLLLLGE VDFWFSIIRP SHLTKFLDLD MRRAKINMEF TQDHKNRKST FVKRKASLVK  60
KISELAILCG IKACMIIDGG ITDQDISQHD QIWPNDPEQV HELINLYKAQ PLQGRSKRAK  120
TLSNFFENQK KKVEVKAENY PTWDSRFDYL SEKELRNLAC VLEKRIENAK GKAGFLKRTN  180
IGSSSLLSRQ EILDYTELMN YNNNLMNQTT SGWPSIDYNF FQANIPTGVN SMGVGWIIDL  240
LLPLIINLTM QIIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-19M-type_MADS family protein