PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12408.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 102aa    MW: 11609.2 Da    PI: 9.358
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP81.31.4e-254494252
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS
         SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52
                Cq+e+C++dls+ak+yh+rhkvCe h+k++vv+v+gl qrfCqqCsrf +l
  PHU12408.1 44 CQAEKCSVDLSDAKQYHKRHKVCENHAKSQVVVVAGLPQRFCQQCSRFDHL 94
                ************************************************665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
METTNNQLKS MEKNDDMLSI IEDAKKKNKK GSPNSSSSSL TRSCQAEKCS VDLSDAKQYH  60
KRHKVCENHA KSQVVVVAGL PQRFCQQCSR FDHLLYLFFS KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.17e-22SBP family protein