PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU12468.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 517aa    MW: 59050.9 Da    PI: 5.0079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU12468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.74e-481505162373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea+++g++ela+ ++  ++   +p g++++R+a+     L   + +++s           ++++s+   aa+k+f++v+P+ kf+h+taN+
  PHU12468.1 150 HHLLAAYGEAMENGHKELAEVIIRSIKGKINPLGESLERVASN----LFLEIEDQGS---------YLRKESSKIIEAAFKVFYQVFPLGKFAHFTANS 235
                 799999**********************************985....7777888222.........22222345555799******************* PP

        GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl.edleleeL 194
                 aI eav  + +++ i+Dfd+++G+QWp++++a+ +R++    lR T +++ e++    + + eet++rL ++A+ +g++++ + ++ ++l ++l+  + 
  PHU12468.1 236 AIIEAVPDNaQTIRIVDFDMGEGIQWPPIIEAMGQRRKA---LRFTSIKKTEEEstsFQWRFEETKRRLLDYANLFGLRLQVEEMTIEELaSELRRMK- 330
                 ******88879*************************776...******99887777667899*********************984443303333333. PP

        GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpres. 279
                    +     E l+ n++++l ++  +   ++        +e+L +  s+   +v++ + ea  ns+    ++ + f + l yy ++f+sle  +p+   
  PHU12468.1 331 ---KrgkgSEWLVFNCMFKLPHMGTRMCRIDAleflkLATELLLAKSSTHKGLVTFGDGEATDNSHnanyTYSAFFNKNLIYYQSIFESLELCFPAYLa 426
                 ...34456***************97666666544443556666666778889********988888777799999*******************99877 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 ++r  +E  +l++++++    +  e      ++++ +   +e G++  ++s+++  qak l+++ +   +rv    e+++++vl Wk+ +Lv vS W
  PHU12468.1 427 QARLAMESLFLAPQVCSFSWIKIWE------EKRSVSYSCTEIGLQGKRVSKENLLQAKELVNERGTP-FRVRieeERQHEMVLEWKGTSLVKVSIW 516
                 ***************9987766666......455567889*************************955.66655467799***************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MQSELLHNSW CSTFHLTKFC GIQSDYENGK HGITYSSLNS KDQDSSGISF SDFTSQSFSD  60
FTSLFSDDDV LTDLPMDDSE FDDVCQWLND NESEENRNIN NISSEMKRDG DLWGPALSGV  120
SSELLSSTNR ATSLILPGNI GEMDRQMSLH HLLAAYGEAM ENGHKELAEV IIRSIKGKIN  180
PLGESLERVA SNLFLEIEDQ GSYLRKESSK IIEAAFKVFY QVFPLGKFAH FTANSAIIEA  240
VPDNAQTIRI VDFDMGEGIQ WPPIIEAMGQ RRKALRFTSI KKTEEESTSF QWRFEETKRR  300
LLDYANLFGL RLQVEEMTIE ELASELRRMK KRGKGSEWLV FNCMFKLPHM GTRMCRIDAL  360
EFLKLATELL LAKSSTHKGL VTFGDGEATD NSHNANYTYS AFFNKNLIYY QSIFESLELC  420
FPAYLAQARL AMESLFLAPQ VCSFSWIKIW EEKRSVSYSC TEIGLQGKRV SKENLLQAKE  480
LVNERGTPFR VRIEEERQHE MVLEWKGTSL VKVSIWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-21GRAS family protein