PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12608.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 29346 Da PI: 9.6814

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.1	6.4e-30	30	79	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKK +ELSvLCdaeva+i+fss+g+lyey+ PHU12608.1 30 KRIENTTNRQVTFCKRRNGLLKKVYELSVLCDAEVALIVFSSRGRLYEYA 79 79***********************************************8 PP
2	K-box	110	2.5e-36	97	194	3	100
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++s+ s +ea+++++qqe++kL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie++qk+e elq++n++Lr+k++e PHU12608.1 97 STSTGSISEANTQYYQQEASKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIEHMQKREIELQNANMYLRAKIAE 194 45556699***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MVFPNNHELD ESSSQLRKSS GGGRGKIEIK RIENTTNRQV TFCKRRNGLL KKVYELSVLC 60 DAEVALIVFS SRGRLYEYAN NSVRATIDRY KKHHADSTST GSISEANTQY YQQEASKLRR 120 QIRDIQTYNR QIVGEALSSL SPRDLKNLEG KLEKAIGRVR SKKNELLFSE IEHMQKREIE 180 LQNANMYLRA KIAEVERAQE QMNLMPGGGG SDQYHHHQAA NYEDARNNFL PVNLLEPNPH 240 YSRRPDEDQT PLRLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	2e-98	MIKC_MADS family protein