PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12644.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 169aa MW: 19636.4 Da PI: 8.8625

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	3.8e-41	69	143	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqve+C +dl ak+y++rhkvC+ h+kap vl++gl+qrfCqqCsrfh +sefD +krsCr+rLa+hn+rrrk PHU12644.1 69 CQVEKCGVDLDGAKKYYKRHKVCQLHAKAPIVLLAGLRQRFCQQCSRFHGISEFDGTKRSCRQRLAGHNQRRRKI 143 *************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MATQIYGRPL KNMAAPMDFV EEDNEFEEED EEEDETVLIG KNSYLKRKKL NLDKKKGEKS 60 DGMQVKQYCQ VEKCGVDLDG AKKYYKRHKV CQLHAKAPIV LLAGLRQRFC QQCSRFHGIS 120 EFDGTKRSCR QRLAGHNQRR RKIPVAVKLE DDQCRQINGE TRPHMDMST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	86	KRKKLNLDKKKGEKSDGMQVKQYCQVEKCGVDLDGAKKYYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-37	SBP family protein