PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU13151.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 247aa MW: 28542.2 Da PI: 6.544

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU13151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.9	3.5e-15	2	42	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++i+++ nr+ t+ kR++ + KK +EL +LC+++v++iif+ PHU13151.1 2 EFIQDHKNRKSTLVKRKASLVKKISELAILCGIKVCMIIFG 42 689*************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MEFIQDHKNR KSTLVKRKAS LVKKISELAI LCGIKVCMII FGGITDQDTS QRDQIWPNDP 60 KEVDELINLY KNQPLTCRSK RAKTFSNFFE NQRKNPEIKA EKYPTWDSRF DYLSEKELQN 120 LARVLEKRIE DAKGKAEFLK STNTRSSSLL SHQEIRDYTE LMNNNYNNLM NQATSLWPSI 180 NYNFFQANIQ SGVNSMGTGM DIQPLTIDDY QFEDADYSMK IEAENWLANN GIGSSSTIMA 240 YPIIYNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	8e-18	M-type_MADS family protein