PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU13288.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 231aa MW: 27114.6 Da PI: 6.7118

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU13288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3e-15	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l++ + +lG g+W++ ar g++R++k+c++rw++yl PHU13288.1 9 KGPWSSDEDSKLIHSISLLGQGRWDSLARFAGLKRSGKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	44.5	3.6e-14	62	105	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++ ++ ++G++ W++Ia+ ++ gR+++++k++w++ PHU13288.1 62 RGKITPQEQLLIILLHFRFGNR-WSKIAENLP-GRSDNDVKNYWRT 105 8999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MEASMEMKKG PWSSDEDSKL IHSISLLGQG RWDSLARFAG LKRSGKSCRL RWLNYLRPNL 60 RRGKITPQEQ LLIILLHFRF GNRWSKIAEN LPGRSDNDVK NYWRTKVQKH AKELHCNVNN 120 SHQFRHFLLY QWLPSLLAQQ ILPTTPPSSP NNTMTCPNAD FISSPEDDNT RYNIWNNLSS 180 FEDEINISHD YSIPTDDEYY CHNYWPTTPS QVLLPDEMLC LDDDMDLWLF P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	8e-59	MYB family protein