PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU13306.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 270aa    MW: 31513.2 Da    PI: 4.5328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU13306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l +++   G g+W++ ++  g+ R++k+c++rw +yl
       PHU13306.1 14 KGRWTKEEDEILTNYILANGEGSWRSLPKNAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding44.82.8e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ +++++ + lG++ W+ Ia++++ gRt++++k++w++
       PHU13306.1  67 RGNITSDEEAIIIKLRATLGNR-WSVIAEYLP-GRTDNEIKNYWNS 110
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MGRTPCCEKV GLRKGRWTKE EDEILTNYIL ANGEGSWRSL PKNAGLLRCG KSCRLRWMNY  60
LKTDLKRGNI TSDEEAIIIK LRATLGNRWS VIAEYLPGRT DNEIKNYWNS RLSRKVDSLR  120
IPSDEKLPLA VVEMAKNKGI QEQIVKRQRR KRKADSNFMT ETSVSTSSCY NNNNNNDDVV  180
LMDDKDAELD QDFIFNCLWD CEGEDLEIVE NNNNEVLSYD NYDQLDCWNW EQLDEIWANE  240
EATRQEIDNN DNVQNCMNQQ QVPIENVVIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-67MYB family protein