PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU13537.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 359aa MW: 38398 Da PI: 9.8465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU13537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H PHU13537.1 96 YKCSVCDKAFSSYQALGGHKASH 118 9***********99999998887 PP
2	zf-C2H2	13.5	0.00022	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H PHU13537.1 163 HVCSICHKAFPTGQALGGHKRRH 185 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MAAPPRYEDD VDDAHNMDSW AKGKRSKRPR VENPPTEEEY LALCLIMLAR SGTGKETGTG 60 NVTEPGSSDV AVHEEPEKKT AELPLVRYTE KTEQAYKCSV CDKAFSSYQA LGGHKASHRK 120 LPTAATTGVA SDDNNPSTST STSGGAGGGG GNISVLNPSG RSHVCSICHK AFPTGQALGG 180 HKRRHYEGKL GGNNRDNGIG GGGGVHSGSV VTTSDGGAST HTPRDFDLNM PPSPELQLDL 240 RIDCGMKSQH LAPEREKGRR QGRLMVVLPK KELSAAAAAL WPDLGSGGVR ERKRGNATPA 300 RVRKEESAAA TRNATGGVPA RFGLWKGQSS LLVDERVRRV VSMLLLLLHW TASHDRWRR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MAAPPRYEDD VDDAHNMDSW AKGKRSKRPR VENPPTEEEY LALCLIMLAR SGTGKETGTG  60
NVTEPGSSDV AVHEEPEKKT AELPLVRYTE KTEQAYKCSV CDKAFSSYQA LGGHKASHRK  120
LPTAATTGVA SDDNNPSTST STSGGAGGGG GNISVLNPSG RSHVCSICHK AFPTGQALGG  180
HKRRHYEGKL GGNNRDNGIG GGGGVHSGSV VTTSDGGAST HTPRDFDLNM PPSPELQLDL  240
RIDCGMKSQH LAPEREKGRR QGRLMVVLPK KELSAAAAAL WPDLGSGGVR ERKRGNATPA  300
RVRKEESAAA TRNATGGVPA RFGLWKGQSS LLVDERVRRV VSMLLLLLHW TASHDRWRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-37	C2H2 family protein