PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU13722.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 207aa MW: 22451.7 Da PI: 7.9988

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU13722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.8	1.1e-40	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkCa++C+++ yf ++p+kfa+vhk+FGasnv+kll ++ e++r da++slvyeA++r+rdPvyG++g i++l+qq+++l+ael+++++ PHU13722.1 20 PCAACKLLRRKCAEECPFSLYFSPHEPQKFAVVHKVFGASNVSKLLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISSLNQQVQSLQAELNATRA 118 7**********************************************************************************************9998 PP DUF260 100 e 100 e PHU13722.1 119 E 119 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MGKRHHILEP SCTKLNTIIP CAACKLLRRK CAEECPFSLY FSPHEPQKFA VVHKVFGASN 60 VSKLLMEVAE NQRADAANSL VYEANVRLRD PVYGCMGAIS SLNQQVQSLQ AELNATRAEI 120 LRYKYREATN SLVNIASTGV GAAVTLAELP QAPSTPTHPS RPQPPQESVG VVVPCCSSPS 180 LGLPLYPTLS SGDNFSAIHN SNIPYFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	6e-70	LBD family protein