PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU14013.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-X1

Protein Properties

Length: 856aa MW: 95552.4 Da PI: 8.4805

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU14013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23.4	1.3e-07	227	244	3	20
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 H+C+++CHeG+CppC++ PHU14013.1 227 THRCNEICHEGDCPPCKA 244 5***************95 PP
2	zf-NF-X1	20.4	1.1e-06	278	297	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC+k CHeG+C+ Cp+ PHU14013.1 278 CGRHKCEKGCHEGDCGDCPL 297 ******************95 PP
3	zf-NF-X1	18.1	5.9e-06	385	404	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ PHU14013.1 385 CGRHACKRRCCDGDCPPCSE 404 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MTSTVAPTLS NSDSDSSHCH HHSDLSSTIF KSYLELSGEQ QNEKHDLIKI QAFLTSSRSG 60 ALSCLICLER IGPSDPTWSC SSICFAVFHL HCIQSWAVQS SNLAAARAAT RAATPNESSL 120 LWHCPKCRIE YPKSQIPKTY YCFCGKLPDP PHDPWVLPHS CGEICGRPLK YNCGHHCLLL 180 CHPGPCPSCP KLVKSKCFCR ALEDVKRCGF KNFSCNGICK NLLDCNTHRC NEICHEGDCP 240 PCKAKGMFKC QCGKVEMKRE CFDRVFRCEN PCDKLLGCGR HKCEKGCHEG DCGDCPLQGK 300 RTCPCGKRVY EGIACDVAVL VCGATCGKML SCGFHRCPER CHRGPCIETC RVVVTKSCRC 360 GSFMKLVPCY QDMTCERKCQ KMRDCGRHAC KRRCCDGDCP PCSEMCDRKL RCRNHKCPAP 420 CHRGSCAPCP VMVPISCLCG ETHFEVPCGA EAEQKPPKCR KSCRVGRLCR HASNCKSHRC 480 HYGACPPCRL LCDERYPCGH KCELRCHGPT PPPLPEFTLK PKKRRLNDQI EPTPGSSCPP 540 CPQLVWRSCL GNHVGAERMM VCSDKAIFSC DNLCGNLLAC GNHYCTKVCH TLVTSTSKSD 600 RSRRAETCEK CTLPCQQEQE PACPHPCPLP CHPGACPPCK ALIKRSCHCG SMVHVFECIY 660 YNSLSAKEQL TVRSCGGPCH RRLRNCTHLC PETCHPGECP SPDQCSKKVT VRCGCRILKK 720 ELLCKEVQIA YRSSGTDAKD VPRNQYGLGL LPCNSDCRSK VKASGTQLQR CKSKAPEEKE 780 TKDNATKRRR RRGRVLEDKK TSTLQRIVAG IRRFLLFVII MIALIASVYL GYKGLLWLSE 840 RMNEAEIQRQ RRYTRT

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MTSTVAPTLS NSDSDSSHCH HHSDLSSTIF KSYLELSGEQ QNEKHDLIKI QAFLTSSRSG  60
ALSCLICLER IGPSDPTWSC SSICFAVFHL HCIQSWAVQS SNLAAARAAT RAATPNESSL  120
LWHCPKCRIE YPKSQIPKTY YCFCGKLPDP PHDPWVLPHS CGEICGRPLK YNCGHHCLLL  180
CHPGPCPSCP KLVKSKCFCR ALEDVKRCGF KNFSCNGICK NLLDCNTHRC NEICHEGDCP  240
PCKAKGMFKC QCGKVEMKRE CFDRVFRCEN PCDKLLGCGR HKCEKGCHEG DCGDCPLQGK  300
RTCPCGKRVY EGIACDVAVL VCGATCGKML SCGFHRCPER CHRGPCIETC RVVVTKSCRC  360
GSFMKLVPCY QDMTCERKCQ KMRDCGRHAC KRRCCDGDCP PCSEMCDRKL RCRNHKCPAP  420
CHRGSCAPCP VMVPISCLCG ETHFEVPCGA EAEQKPPKCR KSCRVGRLCR HASNCKSHRC  480
HYGACPPCRL LCDERYPCGH KCELRCHGPT PPPLPEFTLK PKKRRLNDQI EPTPGSSCPP  540
CPQLVWRSCL GNHVGAERMM VCSDKAIFSC DNLCGNLLAC GNHYCTKVCH TLVTSTSKSD  600
RSRRAETCEK CTLPCQQEQE PACPHPCPLP CHPGACPPCK ALIKRSCHCG SMVHVFECIY  660
YNSLSAKEQL TVRSCGGPCH RRLRNCTHLC PETCHPGECP SPDQCSKKVT VRCGCRILKK  720
ELLCKEVQIA YRSSGTDAKD VPRNQYGLGL LPCNSDCRSK VKASGTQLQR CKSKAPEEKE  780
TKDNATKRRR RRGRVLEDKK TSTLQRIVAG IRRFLLFVII MIALIASVYL GYKGLLWLSE  840
RMNEAEIQRQ RRYTRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	519	525	LKPKKRR
2	787	792	KRRRRR
3	841	852	RMNEAEIQRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein