PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU14078.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19010.5 Da    PI: 9.7165
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU14078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.8e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k ien  nrqvtfskRr+g+lKKA+ELSvLCd evaviifsstgkl+e+ss
  PHU14078.1  9 KLIENVNNRQVTFSKRRAGLLKKASELSVLCDSEVAVIIFSSTGKLFEFSS 59
                569**********************************************96 PP
2K-box32.92.7e-1295145959
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLe 59 
                 ++++  ++ q+e++ Lk+e+ +L+++q +llG+dL+ + l+eL+ Le+qL+
  PHU14078.1  95 QQTHFLKQEQKEVDSLKDELAKLKTKQLRLLGKDLNGMGLNELRLLEHQLN 145
                 4555568899***************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KASELSVLCD SEVAVIIFSS TGKLFEFSST  60
SMKQTLSRYN RCVSSTESSA VEKKPEGNEQ PQSQQQTHFL KQEQKEVDSL KDELAKLKTK  120
QLRLLGKDLN GMGLNELRLL EHQLNXVSSG MYLFVESWKS ELWYSTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-47MIKC_MADS family protein