PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU14276.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 348aa MW: 37644.7 Da PI: 6.8822

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU14276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.8	5.8e-41	177	276	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++p+++r d+++slvyeA++r++dPvyG++g i++lqqq++ l+ael+++++ PHU14276.1 177 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPKSQRADTANSLVYEANVRLKDPVYGCMGAISALQQQVHALQAELNVIRA 275 7**********************************************************************************************9987 PP DUF260 100 e 100 e PHU14276.1 276 E 276 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGINQILVAI SLGSAPRGAI SSIDICWNCL YALTTCQESK ESPDVVNDSN MEGPSLQSIS 60 MVSKFPEAFL YDLFGVPPDR DIKSRIDLLL DTSERSPPLA TLAKYSSNTS SLSSSSNMST 120 PKSPSNVSIG SSTKSPGSER YEEIGKKIKR EADDYSQVGR RYMLVPPGST TSNTVTPCAA 180 CKLLRRRCAQ ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVPKSQR ADTANSLVYE 240 ANVRLKDPVY GCMGAISALQ QQVHALQAEL NVIRAEIMKY NTSLTPSSHI TSLLSSGEVS 300 VVALPPPPPS LILPPTIFSA DAIMYTQPST TTTEFSTISS ENNISYFG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGINQILVAI SLGSAPRGAI SSIDICWNCL YALTTCQESK ESPDVVNDSN MEGPSLQSIS  60
MVSKFPEAFL YDLFGVPPDR DIKSRIDLLL DTSERSPPLA TLAKYSSNTS SLSSSSNMST  120
PKSPSNVSIG SSTKSPGSER YEEIGKKIKR EADDYSQVGR RYMLVPPGST TSNTVTPCAA  180
CKLLRRRCAQ ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVPKSQR ADTANSLVYE  240
ANVRLKDPVY GCMGAISALQ QQVHALQAEL NVIRAEIMKY NTSLTPSSHI TSLLSSGEVS  300
VVALPPPPPS LILPPTIFSA DAIMYTQPST TTTEFSTISS ENNISYFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-74	LBD family protein