PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU14499.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 108aa MW: 11479 Da PI: 8.8556

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU14499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.5e-11	13	36	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+++++ G Ck+G++CkF H+ PHU14499.1 13 APICSHYSQVGVCKFGPSCKFDHP 36 589********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence
MFIQLKSSTF PGAPICSHYS QVGVCKFGPS CKFDHPLGIS YSPSASFLAD MPVAPYPGGS 60 FVGTLDPSSS SSDLRPELVS GSSKEVFSTQ ASSMSASKRS SWYNVLKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-16	C3H family protein